Education

PhD Student in BioinforrmaticsInstitute of Biochemistry and Biophysics, University of Tehran, Iran.

Thesis: “Gene Regulation” (Advisor: Dr. Alireza Fotuhi Siahpirani google scholar link )

Lab:Laboratory of Bioinformatics & Computational Genomics (lbcg Lab)

Courses: Special Topics in Bioinformatics, Computational Drug Design, Genomics and Gene Regulation, Modeling Metabolic Networks, Algorithms in Bioinformatics, Advanced Bioinformatics, Biological Databases, Seminar in Bioinformatics

Cumulative GPA: 18.60

M.Sc. in Information Technology Engeeniering, Network Science University of Tehran, Iran.

Thesis: “Persian Plagiarism Detection Base On Word2vec” (Advisor: Dr. Hadi Veisi google scholar link )

Lab:Data and Signal Processing Lab (DSP Lab) DSP Lab

Courses: Computational Linguistics, Complex network

Research interests

• Bioinformatics, especially Gene Regulation
• Machine Learning
• Natural Language Processing

Presentations

• Seminar Presentation: Predicting transcription factor binding site by deep learning

• Feature selection presentation, course: DrugDiscovery projects, Instructor: Dr. Gharaghani

Courses

• Supervised Machine Learning: Regression and Classification(Coursera)
• Introduction to Data Science and scikit-learn in Python(Coursera)
• Machine Learning Models in Science(Coursera)
• Python for Genomic Data Science(Coursera)
• Algorithms for DNA Sequencing(Coursera)
• Introduction to Genomic Technologies(Coursera)
• Huawei's Seeds for the Future Program(Huawei)

Bioinformatic Skills

A list of bioinformatic datasets and tools that I have experience analyzing and employing.


Data Analysis: RNA-seq, phylogenetic trees, Differential gene expression analysis
Software Knowledge: FastQC,Trimmomatic, Hisat2, Samtools, Htseq-coun, BEDTools, MAFFT, RAxML-NG, Picard
R packages: maftools, edgeR, Phangorn, Tidyverse
Programming Languages: R, Python, Bash scripting, Git, GitLab and GitHub
Databases: Ncbi, JASPAR, GRASP (Genome-Wide Repository of Associations between SNPs and Phenotypes), ENCODE, Cistrome, GTEx (Genotype-Tissue Expression)

Projects

Mathematical Foundations of Bioinformatics Projects (Link to GitHub)

Publication

Journal Papers:

• Multi-level text document similarity estimation and its application for plagiarism detection
  mahboobeh golchinpour , Hadi Veisi

Conference Papers:

• Persian Plagiarism Detection Using Word Vectors9th International Conference on Information and Knowledge Technology(IKT 2017), Tehran. (Accepted)

Conference Attendance

Certificate of Participation in "The 12th National Conference and the 3rd International Bioinformatics Conference"

Skills

R, Python

Web Development

JavaScript, XML, JSON

Machine Learning

TensorFlow, PyTorch, Keras

Office

Latex, Word, Excel, PowerPoint, Photoshop

Language Skills